GgaEX0013953 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21909954-21923408:-
Coord C1 exon
chr9:21923285-21923408
Coord A exon
chr9:21914654-21914776
Coord C2 exon
chr9:21909954-21910076
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTAATTGGTTTCAGTGA
3' ss Score
6.72
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GATATAGATGAGTGTGCAGAGGTGAATGGAGGCTGCCAGCAGGGCTGCATCAACACCCACAGCTCTTTCCACTGCCACTGTTGGGCAGGATACAGGCTGCACTCTGATGGGCGCACGTGCTTGA
Seq A exon
TGATAGACCCCTGCACAAGTGGGAATGGAGGATGCTCACAAATCTGTCAAAATGAGAGAGGAACTGCCAAATGTGACTGTCACCCAGGGCATTATCTTTCTACAGATGAGAAGTCCTGCTTAG
Seq C2 exon
ACATTGATGAGTGTGCAGAAGGGAAAGCCAGGTGTGCTCATCACTGTGTGAACATGCTGGGATCCTTCACCTGTGCCTGTAATCCCGGCTTCGAGCTGGGGGCTGATGGGAAGCAGTGCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'0-6,'0-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGTGTGCAGAGGTGAA
R:
GGTAGCACTGCTTCCCATCAG
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event