DreEX0087110 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35441795-35444063:+
Coord C1 exon
chr15:35441795-35441920
Coord A exon
chr15:35442000-35442122
Coord C2 exon
chr15:35443941-35444063
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTATCCTGTGTTCTCCTCAGTGA
3' ss Score
8.95
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CGGTGAACTCTTGCTCAGTGAAGAATGGCGGATGTGAACACAAGTGTGTGGATTTGGGAAACGAACAGTACAAGTGTGAATGTCGAAGCAACTACCAGCTCAAGAGAGACGGAAAGCACTGTGAAC
Seq A exon
TGAAGGACCCCTGTAAAGATCATAACGGCGGATGTTCTCAAATCTGCACTGATGTGAATGGACTGGTTCAGTGCAGCTGCAGAACAGGATTCACATTGGCAAATGACCTCAGGAGATGTGAAG
Seq C2 exon
ACATTGATGAATGTGTGTCCGGTCAGACTAAGTGCGCTCATGGCTGTGTGAACATACCGGGATCTTTCCGCTGTGTGTGTAACCCGGGATTTGAACTGGGTGCTGATGGAAAACAGTGCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGAACTCTTGCTCAGTGA
R:
GCACTGTTTTCCATCAGCACC
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]