MmuEX6070418 @ mm9
Exon Skipping
Gene
ENSMUSG00000063600 | Egfem1
Description
EGF-like and EMI domain containing 1 [Source:MGI Symbol;Acc:MGI:1922990]
Coordinates
chr3:29481829-29549813:+
Coord C1 exon
chr3:29481829-29481951
Coord A exon
chr3:29547139-29547258
Coord C2 exon
chr3:29549691-29549813
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACAGTCTCATTCCTTTCAGAGA
3' ss Score
7.91
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGCCGTGGTGAACGGAGGCTGCCAGCAGCGCTGTATTAACACTCTGGGCACCTTCCACTGTGAGTGTGACACAGGATACAGACGCCATGCTGACGAACGTACCTGCATAA
Seq A exon
AGACAGACCCCTGTGCAGGTGCAAATGGATGTGCTCACCTATGTCAAACTGAAAATGGCATGGCCAGGTGTGCCTGCCACGCTGGGTACCAGCTGTCTGAAGACAAAAAGGCCTGCGAAG
Seq C2 exon
ATATAAATGAGTGTGCTGAAGAACTCGCTCCCTGTGCTCATCACTGTGTGAACTCAAAGGGGTCCTTCACATGTACCTGCCACCCTGGCTTTGAGCTAGGAGCTGACAGAAAACATTGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063600-'11-16,'11-14,14-16=AN
Average complexity
A_C1
Mappability confidence:
89%=60=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF146701=FXa_inhibition=WD(100=85.4),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAGTGTGCCGTG
R:
ACAATGTTTTCTGTCAGCTCCT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: