BtaEX6070011 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014006 | TOR3A
Description
Bos taurus torsin family 3, member A (TOR3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001080376]
Coordinates
chr16:61859830-61862611:+
Coord C1 exon
chr16:61859830-61859943
Coord A exon
chr16:61860546-61860811
Coord C2 exon
chr16:61862433-61862611
Length
266 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTTCCCCACCCCTAGGCC
3' ss Score
9.39
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCTGGAGCCTTGCCCTGCTGGGCCAGCAGTACCTGGATATCTTGAGCACGTGGTCCTGCAGCTTCTGGGACTGCTGCGACAGAGGGGACTGCAAGATCATCAACAACTTCACAG
Seq A exon
GCCTCAAGGCGGACCTGCGCGTGCGCCTGCACGGCCAGCACCTAGCCCGGGAGCTGGTCCTGACGGCGGTGAGGGACTACTTAGAGAAGCCCCGGCCGGACAAGGCCCTGGCTCTGTCGTTCCACGGCTGGTCTGGCACAGGCAAGAACTTCGTGGCGCGGATGCTGGCGGAAAACCTGTACCAGGACGGGCTGAGGAGCGACTGTGTCAAGGTGTTCATCTCTACGTTGCACTTCCCTCACCCCAAGAATGTGGACCTGTATGAG
Seq C2 exon
GAGGAGCTGACGGACAAGATCAGGAAGACGCAGGAGCACTGTCGCCAGACCCTGTTCATTTTAGACGAGGCTGAGAAGCTGCACCCAGGACTGCTGGAGGCCCTCAGGCCACACCTGGAACGCCAGGCCCCCAACAACCACAGAGCCGAGTCCAAGAGGACCATCTTTCTTTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014006-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(14.7=48.7)
A:
PF063096=Torsin=FE(68.2=100)
C2:
PF063096=Torsin=PD(15.5=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCTTGCCCTGCT
R:
CTGAGAAAAAGAAAGATGGTCCTCT
Band lengths:
292-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]