RnoEX0092847 @ rn6
Exon Skipping
Gene
ENSRNOG00000004307 | Tor3a
Description
torsin family 3, member A [Source:RGD Symbol;Acc:1310101]
Coordinates
chr13:74268488-74276275:-
Coord C1 exon
chr13:74276162-74276275
Coord A exon
chr13:74270657-74270922
Coord C2 exon
chr13:74268488-74268666
Length
266 bp
Sequences
Splice sites
3' ss Seq
TGGGACCTCTTTTCTCCTAGGCT
3' ss Score
7.91
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTGGAGCCTTCCTCTGTGGGGCCGGCGGTCGCTGGATATGCTCACTTCATGGTTCTGCCGCTTTCAGGACTGCTGCAGCGCGGGAAACTGCAGGATCTCCAACAACTTCACAG
Seq A exon
GCTTAGAATCAGACCTTCGTGTGCGACTGCATGGCCAGCATCTCGCTAGCAAGCTGGTCCTAGAAGCAGTGAAGGGTTACTTAGAGATGCCCCAAGTTGGCAAGGCTCTGGCTCTGTCATTCCACGGCTGGTCTGGCACAGGCAAGAACTTCGTGGCACGGATGCTGGTGGACAACCTGTATCGGGACGGAATGAGGAGTGACTGTGTCAAGATGTTTATCTCTACCTTCCATTTCCCACACCCCAAGTATGTGGACTTATATAAG
Seq C2 exon
GAGGACTTGCAGAGGCAGATGCAGGAGACGCAGCGGCGCTGCCAGCAGAGCACGTTCGTCTTTGACGAAGCGGAGAAGCTGCACCCGGGGCTACTGGAGCTGCTTGAACCCTACCTGGAACCGAGGAGCCCCGAGACCCATGGAGCTGAGCTGCCCAGAGCCATCTTCCTCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004307_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(14.7=48.7)
A:
PF063096=Torsin=FE(68.2=100),PF085656=CDC37_M=PU(58.2=43.8)
C2:
PF063096=Torsin=PD(15.5=33.3),PF085656=CDC37_M=PD(38.8=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCTTCCTCTGTGGG
R:
CTGAGAAGGAGGAAGATGGCTC
Band lengths:
292-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]