BtaEX6070842 @ bosTau6
Exon Skipping
Description
Membrane cofactor protein [Source:UniProtKB/TrEMBL;Acc:F1MLR1]
Coordinates
chr16:77766256-77779328:-
Coord C1 exon
chr16:77779115-77779328
Coord A exon
chr16:77778681-77778780
Coord C2 exon
chr16:77766256-77766341
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATTTGAAAATTTTCTTTTAGGAA
3' ss Score
8.63
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTTTCTGTTTTTATTCTCTTATTCCTAGTACGCTGCATTGATCCACCAGTATTGGACAGTATGAAGCTTAAGGGTGTCATTAAGCGCCACTATTATCCTGGGGACAGAATAGACTACGAGTGTTACCGAGGATACTTTTATGTGTGGCCTTATCTCCTCTCAGCCACTTGTGAGCCTAATGGCTCATGGAGCCGTATCGAAGAAGCATGTTTAA
Seq A exon
GAAAATCATGTCCAGATCCACAAGTAAAACATGGTAAAGTAGTTGCCCCAAATGACACATTTGAATGGGAATCAGAAGCTCACATTTCTTGTGATGAGGG
Seq C2 exon
TTATTTCTTAAGAGGAAAACCTATTATAATTTGTAACCTTATTGGAGAGAATGTGTCTTGGAGTGATACAATTCCACACTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030910-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=81.9)
A:
PF0008415=Sushi=PU(51.7=88.2)
C2:
PF0008415=Sushi=PD(46.6=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCTGCATTGATCCACCA
R:
CACTCCAAGACACATTCTCTCCA
Band lengths:
252-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]