MmuEX6030227 @ mm9
Exon Skipping
Gene
ENSMUSG00000016493 | Cd46
Description
CD46 antigen, complement regulatory protein [Source:MGI Symbol;Acc:MGI:1203290]
Coordinates
chr1:196909742-196912474:-
Coord C1 exon
chr1:196912286-196912474
Coord A exon
chr1:196911527-196911629
Coord C2 exon
chr1:196909742-196909830
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTATTTTCTTCTAGAAG
3' ss Score
8.6
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATGCCTGTGAACTACCACGGCCATTTGAAGCTATGGAACTCAAGGGTACACCTAAACTCTTTTATGCCGTTGGAGAGAAAATAGAATATAAGTGTAAAAAAGGATACCTGTATCTGTCTCCATACCTGATGATTGCTACCTGTGAGCCAAATCATACATGGGTCCCTATTTCAGATGCTGGTTGTATTA
Seq A exon
AAGTTCAATGTACTATGTTACAAGACCCTTCATTTGGCAAAGTATACTACATAGATGGCAGCTTTTCATGGGGTGCTCGAGCTAAATTTACTTGTATGGAAGG
Seq C2 exon
TTATTACGTAGTTGGTATGTCAGTTCTACACTGTGTGCTTAAAGGTGATGATGAAGCATACTGGAATGGCTATCCCCCACATTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016493-'1-2,'1-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.8)
A:
PF0008415=Sushi=PU(51.7=88.6)
C2:
PF0008415=Sushi=PD(46.7=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCACGGCCATTTGAAGCT
R:
GTGGGGGATAGCCATTCCAGT
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: