BtaEX6070849 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:77492357-77497754:-
Coord C1 exon
chr16:77497572-77497754
Coord A exon
chr16:77493884-77493937
Coord C2 exon
chr16:77492357-77492392
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTCCTTTTTTCTAGGAC
3' ss Score
12.34
5' ss Seq
TAGGTATTA
5' ss Score
4.71
Exon sequences
Seq C1 exon
TGGTCAAATGTGTATATCCAGCCATTGAACATGGAACGATAGTCTCAGGATTTGGACCAAAATATTACTACAAAGCGACGGTTGTACTTAAATGCAATGAGGGTTTTAACCTTTATGGCAACAGTGTAGTTGTCTGTGGTGAGAACAGTACTTGGGAGCCCGAGCTACCAAAGTGTATTAAAG
Seq A exon
GACATCCCCCCCGTCCTACTGATGCATCACCCCCTAACGGTGCTGAGGGTTTAG
Seq C2 exon
GTGCAGGATACATCGTGCTCGTCATTGTTGCTGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397-'11-15,'11-14,16-15=AN
Average complexity
A_C2
Mappability confidence:
83%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.484 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.3),PF0248011=Herpes_gE=PU(12.3=16.1)
A:
PF0248011=Herpes_gE=FE(22.2=100),PF041569=IncA=PU(8.3=26.3)
C2:
PF0248011=Herpes_gE=FE(14.8=100),PF041569=IncA=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGACGGTTGTACTTAAATGCA
R:
AGCAACAATGACGAGCACGAT
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]