RnoEX6046012 @ rn6
Exon Skipping
Gene
ENSRNOG00000007917 | Cd46
Description
CD46 molecule [Source:RGD Symbol;Acc:3061]
Coordinates
chr13:113795574-113802963:-
Coord C1 exon
chr13:113802919-113802963
Coord A exon
chr13:113797977-113798018
Coord C2 exon
chr13:113795574-113795609
Length
42 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTCTTTCTCTAGGAT
3' ss Score
13.27
5' ss Seq
TCGGTAAAT
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTCCTAAGCCTCATTCTACCAAGCCTCCAGTTTACAGTGAATCAG
Seq A exon
GATATCCTAGTCCCCGTGAAGGAATATTTGGCCAAGAATTCG
Seq C2 exon
ATGCATGGATCATTGCTTTGATTGTTGTTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007917-'15-16,'15-15,16-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTCATTCTACCAAGCCTC
R:
CTGAAGTAACAACAATCAAAGCAATG
Band lengths:
76-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]