BtaEX6071229 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004633 | PRSS48
Description
protease, serine, 48 [Source:HGNC Symbol;Acc:HGNC:24635]
Coordinates
chr17:6521155-6527151:-
Coord C1 exon
chr17:6527121-6527151
Coord A exon
chr17:6523283-6523445
Coord C2 exon
chr17:6521155-6521420
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCCTCTTCCTCTAGTGT
3' ss Score
10.59
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AAAGGACTCATGGGTTCTCACTCTTGTAAGA
Seq A exon
TGTGTGGACGACCTGTATACTCAGGCCGTGTTGTGGGTGGCAAGGATGCTGCCGCCACGCGCTGGCCTTGGCAGGTCAGCCTGCAGCTCTCCAACTCCCACGTCTGTGGGGGCTCCCTCCTAAGTGACAGGTGGATAGTCACAGCAGCACACTGCTTACAAAT
Seq C2 exon
GACACGGATTCCTTTCTTGTACACTGTGCAGCTGGGGTCAGTTGAAAGGGACAACCTCGATGAAGGCGTGATACTTCGTGTGAGCCAAATTGTCATCCATCCCACATACAGTAATGTCAGTGGAGACATTGCCCTGTTGAGGCTGTTCTCTAGAGTCACCTACAGTTCTTCCATCCTGCCCATTTGCTTGTCCAATGTCAAAAAGAAGCGGTTGATAATTCCAGACTCTTGCTGGGTGACTGGATGGGGAAAACTGAAAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004633-'7-6,'7-5,9-6=AN
Average complexity
A_C2
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.7=80.0)
C2:
PF0008921=Trypsin=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACTCATGGGTTCTCACTCT
R:
ACCGCTTCTTTTTGACATTGGAC
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]