DreEX6022955 @ danRer10
Exon Skipping
Gene
ENSDARG00000070713 | zgc:162180
Description
zgc:162180 [Source:ZFIN;Acc:ZDB-GENE-070424-25]
Coordinates
chr6:39089236-39090411:+
Coord C1 exon
chr6:39089236-39089256
Coord A exon
chr6:39089600-39089768
Coord C2 exon
chr6:39090143-39090411
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTATGTTCTTTTTTTCTCAGTTT
3' ss Score
8.86
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GTTCACATTCTCAGTTGAATG
Seq A exon
TTTGTGGACTAGCCCCTTTAAACAACCGTATTGTAGGGGGCGTGAATGCTTTTGATGGTTCATGGCCATGGCAGGTCAGTCTGCACAGCCCTATCTATGGCGGTCATTTTTGTGGAGGCTCCCTGATCAACAGTGAATGGGTGCTGACAGCTGCACACTGTTTACCTCG
Seq C2 exon
TATTACTACATCCAGTCTGCTTGTGTTCTTGGGAAAGACGACACAGCAGGGAGTCAACACCTATGAAATCAATCGAACTGTCAGCGTGATCACCGTTCACCCTTCCTACAACAATCTAACCAATGACAATGACATCGCTCTGCTGCACCTGTCCTCTGCTGTTACCTTCAGCAACTATATCAGACCTGTGTGTCTGGCGGCCCAGAACAGTGTCTTCCCAAATGGAACCAGCAGCTGGATCACAGGCTGGGGAAACATTCAGTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070713-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.9=80.7)
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]