BtaEX6095952 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031454 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr22:53236358-53237862:+
Coord C1 exon
chr22:53236358-53236794
Coord A exon
chr22:53237097-53237253
Coord C2 exon
chr22:53237600-53237862
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCACCCTGTCCTCACCCCAGCGT
3' ss Score
7.28
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAAAACATTAAATTGGCAGGCCCCTAGCAAGGACAGTCTCCTCAGATGGACTCTAACCCTTCGGTCTTGGGCTGATTTCTGGGTGGAGACTGTCTCGGATGAGGATCTGAGAGCGAGAGCGTGACTGCGCTCTCAGGCCGGCTTGCAGCAGCCAGATGCGCCGTGGTCCCCATGCTGCTACTCAGCCGCCAGCCGCGAGGGGGCGCCGCAGAGCGCGGAGGCTATCGCGGAGCCCATGGCGTCCCTGGGCGGCCCCCACACCCTCCTGGTCTGGCTTCTGCTCCTTCAACCCTGGCTCACGGAGGCCTCGGAGGATGGGTCGGCTACGTCCTTGCCCCCTCCAGCTCCCTCGGGAGGCGACGCGAAGAACCGCACGGTGGCCCAGCCACCCCTCAGAGGCGCTTCCGAAGTCCCCAAGTTGGTGGAGTTTAGCTTAG
Seq A exon
CGTGCGGCCAAGTGTTCCTGAAAATCTTGGGAGGACACGACAGCGAGGAAGGGAAGTGGCCCTGGCAGGTGAGCCTGAGGGTCCGTAACAGACATGTGTGCGGAGCTTCCCTCGTCACAGAGAGGTGGGTGCTGACTGCAGGCCACTGTATTTTAAG
Seq C2 exon
CCGTTACCAGTACAGTGTCACGATGGGAGATCGGAAACTCCAGGGTACATTATCAGGGTTGGTGGTCCCTGTCAGCCGCGTCGTCGTTCACCCTCAGTTCTCAACAAGTGGAACCGTTAAAAATGACCTTGCTCTTCTCCGGCTCCGCTACCCTGTAAATTTCACTGGCGTTATCCAGCCTATATGCATCCCTGAGAAGACTTTCCGCGTGCAAGCTGGGACCAGGTGCTGGGTGACCGGATGGGGAAGGAAGCAAGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031454-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.0=83.0)
C2:
PF0008921=Trypsin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGAAGTCCCCAAGTTGG
R:
CACGCGGAAAGTCTTCTCAGG
Band lengths:
247-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]