HsaEX6055551 @ hg38
Exon Skipping
Gene
ENSG00000178055 | PRSS42
Description
protease, serine 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr3:46832947-46833823:-
Coord C1 exon
chr3:46833711-46833823
Coord A exon
chr3:46833520-46833676
Coord C2 exon
chr3:46832947-46833206
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTACACTATCCTCACCCCAGTGT
3' ss Score
5.23
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCTGCGGTCCGCGGCCCGGGGAATCTGAAGCGTGGCTCGGGAGCCCCGGGGGACATGGCCTCCTTCTTGGCTGTCGTCGGGGCGCCCGGGGGAGTCAACTCCTGTGTCTTTGA
Seq A exon
TGTGTGGCCGAACCCCTCTGAGAATCGTGGGAGGAGTGGACGCGGAGGAAGGGAGGTGGCCCTGGCAGGTGAGCGTGAGGACCAAAGGCAGGCACATCTGCGGCGGCACCCTGGTCACCGCCACGTGGGTGCTGACGGCAGGCCACTGCATTTCCAG
Seq C2 exon
CCGTTTCCATTACAGTGTCAAGATGGGAGATCGGAGTGTCTATAATGAAAACACAAGTGTGGTGGTCTCAGTCCAAAGAGCTTTTGTCCACCCTAAGTTCTCAACAGTTACAACCATTCGAAATGACCTTGCCCTTCTCCAGCTCCAACATCCTGTGAATTTTACCTCAAACATCCAGCCTATCTGCATCCCTCAGGAGAATTTCCAGGTGGAAGGTAGGACCAGGTGCTGGGTGACCGGATGGGGCAAAACACCAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.3=30.0)
A:
PF0008921=Trypsin=PU(20.6=83.0)
C2:
PF0008921=Trypsin=FE(40.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATCTGAAGCGTGGCTC
R:
TCACAGGATGTTGGAGCTGGA
Band lengths:
253-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains