MmuEX6069400 @ mm10
Exon Skipping
Gene
ENSMUSG00000044664 | Prss42
Description
protease, serine 42 [Source:MGI Symbol;Acc:MGI:2665280]
Coordinates
chr9:110798038-110799420:+
Coord C1 exon
chr9:110798038-110798138
Coord A exon
chr9:110798712-110798868
Coord C2 exon
chr9:110799158-110799420
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCATCTTCCCTCAGTGT
3' ss Score
10.01
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACTGATTGAAAGCAAGAAGCTGTGATGCCTCTGACTCACTGGCGCCTCCCTGCAGCCCTCCACGGAGCCCGTTTCTCCTGACAGAACGGAGGGCGGCCAC
Seq A exon
TGTGTGGCCAACCCTTTATGAAGATCATGGGAGGGGTAGACGCTGAAGAGGGGAAGTGGCCTTGGCAGGTGAGCGTTCGGGTCAGGCACATGCATGTCTGTGGAGGTTCCCTCATCAATTCCCAGTGGGTGCTGACTGCCGCCCATTGTATTTACAG
Seq C2 exon
CCGAATCCAGTACAACGTCAAGGTGGGCGATCGGAGTGTCTACCGACAGAATACAAGTCTGGTGATTCCCATCAAGACCATCTTTGTCCACCCTAAGTTCTCAACAACTATCGTCGTTAAAAATGATATTGCTCTTCTCAAGCTCCAACACCCTGTGAATTTCACCACTAACATATACCCTGTCTGCATCCCTTCAGAGAGTTTTCCTGTAAAAGCTGGGACCAAATGTTGGGTGACAGGATGGGGAAAACTAGTGCCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044664-'2-3,'2-1,8-3
Average complexity
C3
Mappability confidence:
100%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0008921=Trypsin=PU(19.0=83.0)
C2:
PF0008921=Trypsin=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCTGTGATGCCTCT
R:
CACAGGGTGTTGGAGCTTGAG
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types