RnoEX0070363 @ rn6
Exon Skipping
Gene
ENSRNOG00000031971 | Prss42
Description
serine protease 42 [Source:RGD Symbol;Acc:1562548]
Coordinates
chr8:119064351-119066339:+
Coord C1 exon
chr8:119064351-119065186
Coord A exon
chr8:119065518-119065674
Coord C2 exon
chr8:119066077-119066339
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCGTCCTCACTCAGTGT
3' ss Score
7.41
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CAGAGTTCTGTCCTTACCAGTTCGTCAGGCTCCGCAGGAAGTAAGGGTCCTGAATTGGGAGGTCTCCATCAAGGATGGCTGTCTCCTCTGGCCCAGGCCAGAGTGTGCTCAGTGTGTCAGAAGCCGCGACTCGCCACTGATGCGTCCGACTCACTGGCGCCTCCTGCAGCCCTTTGGGGAGCCCGTTTCTCCTGACAGAATCGAGGGTGGCCACGTGAACCTGGAGAACGGGTGCCATCTTACTGGGAGGGGTTGGGGTGACCTACGTGGTGGCATGGCGTCCGGAGGTGGCTCCCTGGGCTTCGTAGCCTGCCTCTTGCTGCTTCAGCCGAAGCCCTGCGAGGCCTGGGCAGCTGCCTCCATACTCTCTACTTCCGGTTTCCCCTCAGGGCTCAGTGAATCTCCGGGGGAAAACTCACCGCCACCTACCCCGGTGCACACGTCCAAAGTGGCCTCCCAGGGGTCTACCACCCGCTTTCCTTTCACGAACTTTTCCATAG
Seq A exon
TGTGTGGCCAACCCTTGATGAAAATCATGGGAGGGGTGGATGCGGAAGAGGGAAAGTGGCCCTGGCAAGTGAGCCTTCGGGTCAGACACATGCACGTCTGCGGAGGATCCCTCCTCAACTCCCAATGGGTGCTGACTGCGGCTCATTGCATACACAG
Seq C2 exon
CCGAGTCCAGTACAACGTCAAGATGGGCGATCGGAGTGTCTACCGGCAAAATACAAGTCTGGTGATTCCCATCCAGAACATCTTTGTCCACCCTAAGTTCTCAACAACTACCGTTGTCCAAAATGACATTGCCCTTCTCAAGCTCCAACAGCCCGTGAATTTCACCTCTAGCATCCATCCTATTTGTGTCCCTACGGGGACTTTTCATGTGAAAGCGGGAACCAAATGCTGGGTGACAGGATGGGGCAAACCAGATCCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031971-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.0=83.0)
C2:
PF0008921=Trypsin=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGAATCTCCGGGGGAAA
R:
GTTGGAGCTTGAGAAGGGCAA
Band lengths:
257-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]