GgaEX0023788 @ galGal3
Exon Skipping
Gene
ENSGALG00000016144 | F1NY88_CHICK
Description
NA
Coordinates
chr1:112394483-112397793:-
Coord C1 exon
chr1:112397750-112397793
Coord A exon
chr1:112396442-112396616
Coord C2 exon
chr1:112394483-112394658
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTGTATGCCTGGCTTCTCAGAGT
3' ss Score
6.57
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
TGATTACTGTGCATCAGGAAATGTGGTTTCTCTGCGCTGCATAG
Seq A exon
AGTGCGGCCTGCCCACTAAAAGCACAGCTGTCATGAGCAGGATCGTGGGTGGCAGCATGGCGTCGCTGGGGCAGTGGCCGTGGCAGGTGAGCCTCCATGTGCAGGACACCCACGTCTGTGGAGGCTCCATCATCACCCGCGAGTGGCTGGTGACGGCGGCCCACTGTGTGGAGGG
Seq C2 exon
GCTATTTTCTGACCCGTACATCTGGTCTGTTTATGCTGGGATTCTGAGTCAGAATGAGATGCACTCAAGGCCTGGATACAGAGTGCAAAAAATAATTTCCCATCCAAATTATGATACAGATTCTAAAGACAATGATGTCGCCCTTATGAAGTTAGAGACACCGCTGAGTTTTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016144-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.5=100)
A:
PF154941=SRCR_2=PD(5.2=8.5),PF0008921=Trypsin=PU(19.2=74.6)
C2:
PF0008921=Trypsin=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCATCAGGAAATGTGGT
R:
AGTAAAACTCAGCGGTGTCTCT
Band lengths:
213-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]