BtaEX6003711 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009132 | TMPRSS2
Description
Bos taurus transmembrane protease, serine 2 (TMPRSS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081585]
Coordinates
chr1:143219208-143222524:-
Coord C1 exon
chr1:143222481-143222524
Coord A exon
chr1:143220993-143221164
Coord C2 exon
chr1:143219208-143219383
Length
172 bp
Sequences
Splice sites
3' ss Seq
GCACTGTGCTTGTCTCTCAGAAT
3' ss Score
8.68
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
CGATGTTTGTTCTTCAAAAACAGTGGTTTCTTTACGCTGTATAG
Seq A exon
AATGCGGGGTCTCGGTGAAGACGAGCCGCCAGAGCCGGATCGTGGGCGGATCGAATGCTTACTCGGGCGAATGGCCCTGGCAGGTTAGCCTGCACGTGCAGGGCATCCACGTCTGTGGGGGCTCCATCATCACCCCGGAGTGGATCGTGACAGCCGCGCACTGCGTAGAGGA
Seq C2 exon
ACCTCTTAACAATCCCAAGATCTGGGTGGCCTTTGCAGGAATCTTGAAACAATCTTACATGTTCTATGGAAGTGGATACCGAGTAGCAAAAGTGATTTCCCACCCAAATTATGATTCCAAGACCAAGAACAATGACATTGCGCTAATGAAGCTGCAGACGCCTCTGACTTTCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009132-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.6=100)
A:
PF154941=SRCR_2=PD(5.2=8.6),PF0008921=Trypsin=PU(19.2=75.9)
C2:
PF0008921=Trypsin=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGTTTGTTCTTCAAAAACAGTGG
R:
CGTTGAAAGTCAGAGGCGTCT
Band lengths:
220-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]