RnoEX0092123 @ rn6
Exon Skipping
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38068544-38075292:-
Coord C1 exon
chr11:38075182-38075292
Coord A exon
chr11:38069436-38069604
Coord C2 exon
chr11:38068544-38068719
Length
169 bp
Sequences
Splice sites
3' ss Seq
CATGTGTTTGTCACCCTCAGAAT
3' ss Score
9.51
5' ss Seq
AGAGTATGC
5' ss Score
3.16
Exon sequences
Seq C1 exon
GAACAGCTTTTATTCTAGCCAAGGGATACCAGACCAGAGCGGGGCAACGAGCTTTATGAAGCTGAATGTGAGCGCAGGCAACGTCGACCTCTATAAAAAACTCTACCACAG
Seq A exon
AATGCGGGGTTCGCTCAGTAAGACGTCAGAGCAGGATTGTGGGTGGGTCGACCGCCTCACCAGGAGACTGGCCCTGGCAGGTCAGCCTGCACGTCCAAGGTATCCATGTCTGCGGAGGCTCCATCATCACCCCCGAGTGGATTGTGACAGCCGCCCACTGTGTGGAAGA
Seq C2 exon
ACCCCTCAGCAGCCCTAGGTACTGGACGGCATTTGCGGGAATTTTGAAACAGTCTCTCATGTTCTATGGAAGTAGACACCAGGTAGAAAAAGTGATTTCCCATCCAAATTACGACTCTAAGACCAAGAATAATGACATTGCTCTCATGAAGCTGCAGACACCCTTGGCTTTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.5=100)
A:
PF154941=SRCR_2=PD(5.2=8.8),PF0008921=Trypsin=PU(19.2=77.2)
C2:
PF0008921=Trypsin=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCAACGAGCTTTATGAA
R:
AAAAGCCAAGGGTGTCTGCAG
Band lengths:
244-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]