HsaEX6006260 @ hg19
Exon Skipping
Gene
ENSG00000184012 | TMPRSS2
Description
transmembrane protease, serine 2 [Source:HGNC Symbol;Acc:11876]
Coordinates
chr21:42843733-42848547:-
Coord C1 exon
chr21:42848504-42848547
Coord A exon
chr21:42845252-42845423
Coord C2 exon
chr21:42843733-42843908
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTTTGTCATCCTCAGCCT
3' ss Score
7.65
5' ss Seq
AAAGTATGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
TGATGCCTGTTCTTCAAAAGCAGTGGTTTCTTTACGCTGTATAG
Seq A exon
CCTGCGGGGTCAACTTGAACTCAAGCCGCCAGAGCAGGATTGTGGGCGGCGAGAGCGCGCTCCCGGGGGCCTGGCCCTGGCAGGTCAGCCTGCACGTCCAGAACGTCCACGTGTGCGGAGGCTCCATCATCACCCCCGAGTGGATCGTGACAGCCGCCCACTGCGTGGAAAA
Seq C2 exon
ACCTCTTAACAATCCATGGCATTGGACGGCATTTGCGGGGATTTTGAGACAATCTTTCATGTTCTATGGAGCCGGATACCAAGTAGAAAAAGTGATTTCTCATCCAAATTATGACTCCAAGACCAAGAACAATGACATTGCGCTGATGAAGCTGCAGAAGCCTCTGACTTTCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184012-'16-18,'16-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.6=100)
A:
PF154941=SRCR_2=PD(5.2=8.6),PF0008921=Trypsin=PU(19.2=75.9)
C2:
PF0008921=Trypsin=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTGTTCTTCAAAAGCAGTG
R:
CGTTGAAAGTCAGAGGCTTCT
Band lengths:
218-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)