MmuEX6063695 @ mm9
Exon Skipping
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97790501-97793655:-
Coord C1 exon
chr16:97793612-97793655
Coord A exon
chr16:97791982-97792150
Coord C2 exon
chr16:97790501-97790676
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTTATGCTTGTCACCCTCAGAAT
3' ss Score
7.68
5' ss Seq
AGAGTATGC
5' ss Score
3.16
Exon sequences
Seq C1 exon
TGACTCATGTTCATCCCGCATGGTGGTTTCTTTGCGCTGTATAG
Seq A exon
AATGCGGGGTTCGCTCAGTGAAACGCCAGAGCAGGATTGTGGGTGGATTGAATGCCTCACCAGGAGACTGGCCCTGGCAGGTCAGCCTGCACGTCCAAGGCGTCCACGTCTGCGGAGGCTCCATCATCACCCCCGAGTGGATTGTGACGGCCGCCCACTGTGTGGAAGA
Seq C2 exon
ACCCCTCAGCAGCCCGAGGTACTGGACGGCATTTGCGGGAATTCTGAGACAGTCTCTCATGTTCTATGGAAGTAGACACCAGGTAGAAAAAGTAATTTCCCATCCAAATTACGACTCTAAGACCAAGAATAACGACATTGCTCTCATGAAGCTGCAGACACCTTTGGCTTTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385-'15-12,'15-10,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.6=100)
A:
PF154941=SRCR_2=PD(5.2=8.8),PF0008921=Trypsin=PU(19.2=77.2)
C2:
PF0008921=Trypsin=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATGTTCATCCCGCATGG
R:
CATTAAAAGCCAAAGGTGTCTGCA
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: