HsaEX6055551 @ hg19
Exon Skipping
Gene
ENSG00000178055 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:30716]
Coordinates
chr3:46874482-46875585:-
Coord C1 exon
chr3:46875372-46875585
Coord A exon
chr3:46875010-46875166
Coord C2 exon
chr3:46874482-46874696
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTACACTATCCTCACCCCAGTGT
3' ss Score
5.23
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGTCCTCTGGCGGCGGCTCCCGGGGCCTCCTGGCGTGGCTTCTGCTCCTTCAGCCCTGGCCCGGGCAGAACTGGGCGGGCATGGCGGCGCCACGCCTCCCGTCCCCTCTCCTCTCAGAGGAGGGCGGCGAGAACCCCGAAGCGAGCCCGGCTCCAGGACCTGAAGCGGGCCCCCCACTCAATCTGTTTACGTCCTTTCCAGGTGACTCACTGC
Seq A exon
TGTGTGGCCGAACCCCTCTGAGAATCGTGGGAGGAGTGGACGCGGAGGAAGGGAGGTGGCCCTGGCAGGTGAGCGTGAGGACCAAAGGCAGGCACATCTGCGGCGGCACCCTGGTCACCGCCACGTGGGTGCTGACGGCAGGCCACTGCATTTCCAG
Seq C2 exon
CCGTTTCCATTACAGTGTCAAGATGGGAGATCGGAGTGTCTATAATGAAAACACAAGTGTGGTGGTCTCAGTCCAAAGAGCTTTTGTCCACCCTAAGTTCTCAACAGTTACAACCATTCGAAATGACCTTGCCCTTCTCCAGCTCCAACATCCTGTGAATTTTACCTCAAACATCCAGCCTATCTGCATCCCTCAGGAGAATTTCCAGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055-'0-2,'0-1,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.6=83.0)
C2:
PF0008921=Trypsin=FE(87.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCTTCTGCTCCTTCAG
R:
TGGACTGAGACCACCACACTT
Band lengths:
255-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)