BtaEX6072963 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63400035-63401990:-
Coord C1 exon
chr17:63401818-63401990
Coord A exon
chr17:63400256-63400393
Coord C2 exon
chr17:63400035-63400170
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCGAGAGTCCTCTCTCCCAGGTG
3' ss Score
4.13
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGGCTGGGGGCCCAGCCAGGGCCCTGGTCCCGCCCTCAATGACTGTCCGAGAAGGCTACCTACTCAAGCGCAAGGAGGAGCCTGCCGGCCTGGCCACACGCTTTGCCTTCAAGAAGCGCTACTTCCGGCTCAGCGGGGAGATGCTGTCCTACTCCAAGAGTCCTGAGTGGCAG
Seq A exon
GTGCGCTCGTCCATCCCCGTGTCGCACATCCGAGCCGTGGAGCGCGTGGACGAGGGCGCCTTCCAGCTGCCGCACGTGATGCAGGTGGTGACGCAGGACGGCGCGGGGGCGCCGCACACCACCTACCTCCAGTGCAAG
Seq C2 exon
AACGTGAACGAGCTCAACCAATGGCTGTCGGCCCTGCGCAAGGCCAGCGCCCCCAACCCGGACAAGCTGGCCTCCTGCCACCCCGGTGCCTTCCGCAGCGGGCACTGGACCTGCTGCCTCCAGGCCGAGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739-'20-25,'20-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.022 C2=0.043
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=74.1)
A:
PF0016924=PH=FE(42.1=100)
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCCGAGAAGGCTACCT
R:
TGGAGGCAGCAGGTCCAG
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]