RnoEX0074212 @ rn6
Exon Skipping
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41420394-41421813:-
Coord C1 exon
chr12:41421641-41421813
Coord A exon
chr12:41420607-41420744
Coord C2 exon
chr12:41420394-41420529
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCTGGCCGCCCACAGGTT
3' ss Score
9.52
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AGGCTGGGGGATCAACCTGCGCCCTGGTCCAACCCTCAACAATTGTTCGAGAAGGCTTTCTGCTGAAGCGCAAGGAGGAGCCTGCAAGCCTGGCCACCCGCTTTGCCTTCAAGAAGCGCTACTTCCGACTGAGTGGGCGGGACCTCTCCTACTCTAAGACTCCTGAGTGGCAG
Seq A exon
GTTCACTCATCCATCCCGTTGTCCTGCATCCGGGCTGTGGAGCGTGTGGATGAGGGTGCCTTCCAACTGCCACATGTCATGCAGGTGGTGACACAGGATGGCACCGGGGCATCACACACCACCTACCTCCAGTGCAAG
Seq C2 exon
AACGTGAATGACCTCAATCAATGGCTGTCAGCCCTGCGCAAAGCCAGCGCCCCCAACCCGGGCAAGCTGGCTGCTTGTCACCCTGGTGCCTTCCGCAGCGGGCGCTGGACCTGCTGCCTCCAGGCCGAGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374-'25-34,'25-32,26-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=74.1)
A:
PF0016924=PH=FE(42.1=100)
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGCTTTCTGCTGAAGCG
R:
TGGAGGCAGCAGGTCCAG
Band lengths:
246-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]