BtaEX6076007 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59508989-59515680:+
Coord C1 exon
chr20:59508989-59509103
Coord A exon
chr20:59509604-59509794
Coord C2 exon
chr20:59515559-59515680
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTAAATGCTGTCTCCTCCAGGTC
3' ss Score
11.61
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTGCCACCCGGGGTAGCATCCTCTACTTTCTCATCACGGAGATGCGCTTGGTTAATGAGATGTATCAGACTTCGCTCCGCCAGTTTCTTGGCTTGTTTGACCTTTCCTTGGCCAG
Seq A exon
GTCTGTCAAGAGCCCAATTACAAGCAAGAGGATCGCTAATATCATTGAGCACATGACCTATGAGGTTTTTAAGTACACAGCCCGGGGGTTGTATGAGGAGCACAAATTCCTGTTCACGCTGCTGCTTACCCTGAAGATTGACATCCAGAGGAACCGAGTCAAGCATGAAGAGTTTCTCACCCTTATTAAAG
Seq C2 exon
GTGGTGCCTCCTTGGACTTGAAAGCCTGTCCTCCTAAACCATCTAAATGGATCCTGGACATGACCTGGCTAAATTTGGTGGAACTCAGCAAACTTAGACAGTTTTCTGATGTCCTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'69-69,'69-68,70-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0302810=Dynein_heavy=PU(4.9=82.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCGGGGTAGCATCC
R:
CTGATCAAGGACATCAGAAAACTGT
Band lengths:
234-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]