MmuEX6053030 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28350720-28366046:+
Coord C1 exon
chr15:28350720-28350834
Coord A exon
chr15:28351320-28351510
Coord C2 exon
chr15:28365925-28366046
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTAAATGGTCTCTTCCTCAGGTC
3' ss Score
9.89
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTGCTACACGGGGCAGCATCCTCTACTTCCTGATCACGGAGATGCGCTTGGTTAATGAGATGTATCAGACTTCGCTCCGTCAGTTTCTGGGCTTGTTTGACCTTTCCTTAGCCAG
Seq A exon
GTCTGTCAAGAGCCCAATTACAAGCAAGAGGATTGCTAATATCATTGAGCACATGACCTATGAGGTATTCAAGTATGCTGCCCGAGGCCTATATGAAGAGCATAAATTCCTGTTCACTTTGTTGCTCACCCTAAAGATTGACATCCAGAGGAACCTAGTCAAACATGAGGAGTTTCTCACTCTCATTAAAG
Seq C2 exon
GTGGTGCCTCATTGGATCTAAAAGCCTGTCCTCCTAAGCCATCAAAATGGATCCTAGACATGACTTGGCTGAATTTGGTGGAACTTAGCAAACTTAAACAGTTTTCAGACATCCTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'66-67,'66-66,67-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0302810=Dynein_heavy=PU(4.9=82.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACGGGGCAGCATCCTC
R:
CTGATCAAGGATGTCTGAAAACTGT
Band lengths:
234-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: