BtaEX6076022 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59434021-59440855:+
Coord C1 exon
chr20:59434021-59434244
Coord A exon
chr20:59437424-59437622
Coord C2 exon
chr20:59440683-59440855
Length
199 bp
Sequences
Splice sites
3' ss Seq
TTAAACGATGCTTTTGACAGGAA
3' ss Score
5.67
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGTGATTGGGGTAGGTTATTACTGTACCCAGAGGGGTTTCTCAGAAGAAGTGAGAGATTGGGTGACGAAGTTGGTGCCCCTGACACGTCGACTATGGCAAATGACTAAGATTAAAATGCTCCCAACCCCTGCAAAATTCCATTACGTTTTTAACCTTCGAGATCTTTCTAGGATCTGGCAGGGAATGCTGAACACTACTCCAGAGGTTATCAAGGAACCAGAC
Seq A exon
GAACTGTTAAGGCTGTGGAAGCATGAGTGTAAACGAGTTATTGCTGATCGCTTCACGGCATCTGATGACGTGACCTGGTTTGATAAGACTTTAGTCAGCTTGGTGGAGGAGGAGTTTGGTGAAGAGAAAAAACTCTTGGTGGATTGTGGAACTGACACTTACTTTGTGGATTTCTTGAGGGATGCACCTGAAGCTACAG
Seq C2 exon
GTGAAACATCTGAGGAGGCTGATGCTGAGATGCCCAAAATTTATGAGCCTGTTGAATCTTTTGATCACCTGAAGGAGCGTTTGAATATGTTCTTGCAGCTCTATAACGAGAGCATCCGTGGTGCAGGCACGGACTTGGTGTTCTTTGCAGATGCCATGGTCCACTTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'51-52,'51-51,52-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.172
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(27.4=100)
A:
PF127752=AAA_7=PD(3.0=11.9)
C2:
PF127802=AAA_8=PU(8.4=39.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAACCCCTGCAAAATTCC
R:
TGCAAAGAACACCAAGTCCGT
Band lengths:
253-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]