MmuEX6053047 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28297441-28302170:+
Coord C1 exon
chr15:28297441-28297664
Coord A exon
chr15:28300110-28300308
Coord C2 exon
chr15:28301998-28302170
Length
199 bp
Sequences
Splice sites
3' ss Seq
TTTAATTATGTCTTCAACAGGAA
3' ss Score
9.75
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGTGATTGGGGCAGGCTACTACTGTGCCCAGCGGGGCTTCTCGGAGGAAGTTCAAGATGCTCTGATAAAGCTGGTACCCCTGACGCGCCGTCTGTGGCAGATGACCAAACTGAAGATGCTCCCAACGCCTGCGAAATTCCACTATGTGTTCAACCTTCGAGACCTCTCCAGGATCTGGCAGGGCATGCTGAACATCACTTCAGAGGTCATCAAAGACACAGAC
Seq A exon
GAACTCCTCAGGCTGTGGAAGCATGAGTGTAAACGTGTGATAGCTGACCGCTTTAGCATGTCCAGCGATGTGACCTGGTTCGATAAGGCTGTTGTCAGTTTGGTAGAGGAGGAGTTTGGTGAAGAGAAAGCACCTGTAGTGGATTGTGGAGTTGATGCTTATTTTGTGGATTTCTTGAGGGATGCACCAGAAGCTACAG
Seq C2 exon
GTGAAACACCTGAGGAGGCTGATGCTGAAATGCCAAAGCTTTATGAGCCAATCGCATCCCTTAACCACCTGCGAGAGCGTCTGAGTGTGTTCCTGCAGCTCTATAACGAGAGCATCCGTGGCACTGGCATGGACATGGTGTTCTTCATAGATGCAATGGTTCACTTAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'49-50,'49-49,50-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.172
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(27.1=100)
A:
PF127752=AAA_7=PD(2.9=11.9)
C2:
PF127802=AAA_8=PU(8.4=39.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGGGCAGGCTACTACTGT
R:
GCATTTCAGCATCAGCCTCCT
Band lengths:
252-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: