BtaEX6076044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59351834-59358763:+
Coord C1 exon
chr20:59351834-59352069
Coord A exon
chr20:59357156-59357374
Coord C2 exon
chr20:59358701-59358763
Length
219 bp
Sequences
Splice sites
3' ss Seq
AATTTTTCTTCTTTTTGTAGGAA
3' ss Score
10.18
5' ss Seq
GTGGTACGA
5' ss Score
5.95
Exon sequences
Seq C1 exon
CTGATCTGAAGTTCACCTTGACTGCTGAGACGAAGGCCTGGATGGTTGTCATCGGCCGTCACTGTAACCAAAAATACAGAAGTGAAATGGAAAACATTTTTACACTTGTTGAAGAATTCAATAAGAAACTGAATCGCCCCATTAAAGACTTAGATGATATTCGAATTGCCATGGCAGCACTGAAGGAAATTAGGGAGCAGCAAATCGCCATTGACTTTCAAGTGGGACCCGTCGAG
Seq A exon
GAATCCTATACTCTGCTTAACAAATATGGGCTTCTGATAGCAAAGGAAGAGATGGACAAAGTGGATGCCCTGCGTTACTCTTGGGAGAAGCTTCTGGCACGTGCCAGTGAAGTTCAGAATGAACTAGTCTCACTACAACCCGGTTTCAGGAAAGAGCTTATTGGTACCGTGGAGGTTTTCCTCCAAGACTGTCACCAGTTCTATCAGGACTATGATGTG
Seq C2 exon
AATGGTCCAATGGCTAGTGGCCTGAAACCCCAGGAAGCCAGTGATAGACTTATCATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTGAAGTTCACCTTGACTGC
R:
ACATGATAAGTCTATCACTGGCTTCC
Band lengths:
293-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]