GgaEX6020600 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76630458-76632480:+
Coord C1 exon
chr2:76630458-76630693
Coord A exon
chr2:76631519-76631737
Coord C2 exon
chr2:76632418-76632480
Length
219 bp
Sequences
Splice sites
3' ss Seq
TTGATCCAACCTTCTGACAGGAA
3' ss Score
8.12
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGATCTGAAGCTAGCACTGAGAGCAGAAATCAAAGACTGGATGAGTGTCTTGGGTTATCATTGTAATAAGAAGTACAGAACAGAGATGGAAACGATTTTCACTTTTATAGAGGAAACTGACAGGAAGTTAAATCGTCGCATTGAGGATCTGGATGACATAAGAACAGCCATGTCTGCATTAAAAGACATTAGAGAACTACAGATTTCCATAGACTCTCAAGTTGGGCCCGTTGAG
Seq A exon
GAATCCTATGCTATATTAAACAAGTATGATCTCCTTGTGACCAAGGAAGAGTCAGAGAAGGTGGATACTTTGCACTACACTTGGGAAAAGCTGCTGTTCCGAGCAAATGAAGTGCAGAATGAGCTCATTGCTTTGCAGCCAAAGTTCAGAAGAGAGCTAATAAGCTCTCTGAAGACTTTTACTGAAGATTGTGCACAGTTCTATTCAGATTATGAACAG
Seq C2 exon
AGTGGGCCGCTAGTGGTTGGTTTAGAGCCTCAGGAAGCCAGTGACAGGCTTACCATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'24-30,'24-29,25-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGCTAGCACTGAGAGCA
R:
AAACATGGTAAGCCTGTCACTGG
Band lengths:
292-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]