BtaEX6076052 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59324725-59333090:+
Coord C1 exon
chr20:59324725-59324931
Coord A exon
chr20:59330129-59330300
Coord C2 exon
chr20:59332945-59333090
Length
172 bp
Sequences
Splice sites
3' ss Seq
TCACCCCTGTTTCACTGCAGATG
3' ss Score
10.9
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
ACTGAAGAAATTCACGTAGGACTTGAGGCTTCTTTATTGGTGAAGGCTCCTGGCACAGGGGAACTGTTTGTAAACTTTGATCCTCAGATACTAACCTTATTTAGAGAAACCGAGTGCATGTCACAGATGGGTCTACAAGTTTCACCCTTTGCAGCTGCTCTTTTCCAGAAACGAGACACATACAAGAAGAACTTCAGTAACATGAAG
Seq A exon
ATGATGCTGGCTGAATATCAGAGGGTGAAGTCAAAAATGCCTGCCATCATAGAGCAACTGATGGTCCCTCATTTGGCGAAAGTGGATGAAGCTCTCCAGCCTGGCCTGGCTGCACTGACCTGGACATCACTGAACATTGAGATGTACTTGAAAAATGCTTTTGCAAAGATAA
Seq C2 exon
GGGACCTGGAGTTGCTGCTCGACAGGGTCAATGATTTGATCGAGTTCCGCATTGACGCCATCCTGGAAGAAATGAGCAGCACTCCTCTTTGTCAGCTCCCTGGGGAGGAGCCACTTACCTGCGAAGAGTTTCTCCAGATGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'16-15,'16-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.2=100)
A:
PF083857=DHC_N1=PD(8.9=86.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGGTGAAGGCTCCTGGCA
R:
TCTTCCAGGATGGCGTCAATG
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]