RnoEX0028531 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:80991634-81002263:+
Coord C1 exon
chr2:80991634-80991840
Coord A exon
chr2:80998041-80998212
Coord C2 exon
chr2:81002118-81002263
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTAGTCACATTCCATTGCAGATG
3' ss Score
8.62
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ATTGAAGAAATTCACGTGGGTCTTGAGGCTTCTTTATTGGTGAAGGCTCCAGGCACAGGGCAGTTGTTTGTGAACTTTGATCCTCAGATATTAATCTTATTTAGAGAAACACAGTGCATGTCCCAGATGGGTCTACCTGTGTCACCATTTGCAGCTGCCCTCTTCGAGAAGCGGGACATGTACAAAAAGAACTTCAGTGACATGAAG
Seq A exon
ATGATGCTGTCTGAATACCAGAGAGTGAAGTTGAAAATGCCTCCTGCCATTGAGCAGTTGATGCTCCCGCACTTGGCGAGAGTGGATGAAGCCCTCCAGCCTGGCCTGGCTGTCCTGACTTGGACGTCCCTGAATATTGGAACCTATTTAGAAAATGCTTTTGAAAAGATCA
Seq C2 exon
AGGACCTGGAGCTGCTGCTTGACCGGATCAATGACTTGATTGAGTTCCGCATCCATGCCATCTTGGAGGAAATGAGCAGCGTGGCCCTTTGTCAGCTCCCTCAGGATGACCCCCTGACTTGTGAAGAATTCCTCCAAATGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'15-17,'15-15,16-17
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.2=100)
A:
PF083857=DHC_N1=PD(8.9=86.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGGTGAAGGCTCCAGGCA
R:
ACGCTGCTCATTTCCTCCAAG
Band lengths:
255-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]