BtaEX6076669 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016158 | ACAN
Description
aggrecan [Source:HGNC Symbol;Acc:HGNC:319]
Coordinates
chr21:20833151-20835330:+
Coord C1 exon
chr21:20833151-20833325
Coord A exon
chr21:20834629-20834756
Coord C2 exon
chr21:20835037-20835330
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTGGGTTCCCGGTAGGTA
3' ss Score
8.57
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GCATCGTGTTCCATTACAGAGCCATCTCCACGCGCTACACCCTGGACTTTGACAGGGCGCAGCGGGCCTGCCTGCAGAACAGCGCCATCATCGCCACGCCCGAGCAGCTGCAGGCTGCCTATGAGGACGGCTTCCACCAGTGCGACGCCGGCTGGCTGGCCGATCAGACTGTGAG
Seq A exon
GTATCCCATCCACACGCCGAGGGAAGGTTGCTATGGAGACAAGGACGAGTTTCCCGGCGTGAGAACCTACGGCATCCGGGACACCAACGAAACCTATGACGTGTACTGCTTCGCGGAGGAGATGGAGG
Seq C2 exon
GCGAGGTCTTCTATGCAACATCCCCGGAGAAGTTCACCTTCCAAGAGGCAGCCAACGAGTGCCGGCGGCTGGGCGCCCGGCTGGCCACCACGGGCCAACTCTACCTGGCCTGGCAGGGTGGCATGGACATGTGCAGCGCCGGCTGGCTGGCTGACCGCAGCGTGCGATACCCCATCTCCAAGGCCCGGCCTAACTGCGGGGGCAACCTCCTGGGAGTGAGGACCGTCTACCTGCACGCCAACCAGACGGGCTACCCTGACCCTTCATCCCGCTATGACGCCATCTGCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016158-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PU(60.4=98.3)
A:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
C2:
PF0019312=Xlink=WD(100=98.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACACCCTGGACTTTGAC
R:
TGCCAGGCCAGGTAGAGTTG
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]