DreEX6102144 @ danRer10
Exon Skipping
Gene
ENSDARG00000045799 | acanb
Description
aggrecan b [Source:ZFIN;Acc:ZDB-GENE-100422-16]
Coordinates
chr25:19120821-19121637:-
Coord C1 exon
chr25:19121463-19121637
Coord A exon
chr25:19121203-19121330
Coord C2 exon
chr25:19120821-19121114
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTGCATGCATTCTGCTTAGATA
3' ss Score
5.22
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCATTGTATTTCACTACCGAGCAATTTCTACCCGATACACATTAACCTTTGAAATGGCAAAAGCAGCCTGCATTCAGAACAGTGCTGTTATCGCAACTCCAGCACAGTTGCAAGCTGCCTATGATGATGGATTCCATCAGTGTGATGCTGGCTGGCTTTCAGACCAAACCGTGAG
Seq A exon
ATATCCTATCCATGAACCAAGGGAGCCTTGTTATGGAGACAAAGATAATTTCCCAGGTGTTCGAACATATGGAGTCCGAGACGTCAATGAAACCTATGATGTGTACTGTTTTGCAGAGAAAATGTCAG
Seq C2 exon
GCAGAGTGTTCTACTCTATGTCTGTGGAAAAGTTCACCTTTGCAGATGCTGAAGACCAATGTGCAAAGTTAGGAGCCCAATTAGCTACCACAGGACAGCTGTACCTAGCATGGAAGACTGGCATGGATGTGTGCAACGCTGGCTGGCTTGCAGACAGGAGTGTGCGGTACCCTATAAATATAGCTAGACCCCAATGTGGTGGGGGGCTTTTGGGAGTGCGAACAGTTTACCTGTTTCCAAATCAGACTGGTTATCCATACCCAGACTCCCGCTATGATGCAATCTGTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045799-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=PD(4.7=3.4),PF0019312=Xlink=PU(60.4=98.3)
A:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
C2:
PF0019312=Xlink=WD(100=98.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTCAGACCAAACCGTGA
R:
GGTAAACTGTTCGCACTCCCA
Band lengths:
253-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]