BtaEX6077701 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BAD2]
Coordinates
chr21:35184786-35186203:-
Coord C1 exon
chr21:35186056-35186203
Coord A exon
chr21:35185199-35185334
Coord C2 exon
chr21:35184786-35185040
Length
136 bp
Sequences
Splice sites
3' ss Seq
AGGCTCCCTTTCCTTTGCAGCCA
3' ss Score
9.39
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
GGCAGATCATCGGAGGCCGAGAGGCCAGGCCCCATTCCCACCCCTACATGGCATATATTCAGACCCTGACACCAGCAGGTCCGACCATTTGTGGGGGGTTCCTGGTACGTGAAGACTTCGTGATGACAGCAGCTCGCTGCTTGGGAAG
Seq A exon
CCAAATAAATGTCATCTTGGGGATCCACAGTGTCACCGCTTCTGAATGGACGCAGCAGCGCATCCCTGTTCTCAGACCCATCCCCCACCCCAGATACAATCAGCGGAACAACCAGAACGACATCATGTTACTGCAG
Seq C2 exon
CTGGCGAACAGAGCCAGACAGAATGAAGCTGTGAGGCTGGTAGCTCTGCCTCAGACAGAGGAAATGCTGAGCCCTGGGACCCAGTGCACCGTGGCCGGCTGGGGCCTCACCAGACTGCACAGGAGAGCAATCACACTCCAGGAGGTGCAGCTGACAATTCAGAGGGATGGAGAGTGTCACAGTCGCTTTGATTTCTACACTGGCCAAAAGCAGATCTGTGTAGGGGACCCAAGAGAGGGGAAGTCCACTTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040134-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.130 C2=0.012
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.6=94.0)
A:
PF0008921=Trypsin=FE(20.6=100)
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCACCCCTACATGGCAT
R:
GTGTGATTGCTCTCCTGTGCA
Band lengths:
251-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]