BtaEX6079292 @ bosTau6
Exon Skipping
Description
Chymotrypsinogen A Chymotrypsin A chain A Chymotrypsin A chain B Chymotrypsin A chain C [Source:UniProtKB/Swiss-Prot;Acc:P00766]
Coordinates
chr18:2604996-2605919:+
Coord C1 exon
chr18:2604996-2605099
Coord A exon
chr18:2605219-2605298
Coord C2 exon
chr18:2605841-2605919
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCCGTCTTCCTCCAGGAC
3' ss Score
12.58
5' ss Seq
CACGTGAGG
5' ss Score
5.78
Exon sequences
Seq C1 exon
GCTGCGGGGTCCCCGCCATCCAACCTGTGCTAAGCGGCCTCTCCAGGATTGTCAACGGGGAAGAAGCTGTCCCCGGCTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq A exon
GACAAGACCGGCTTCCACTTCTGCGGGGGCTCCCTCATCAACGAGAACTGGGTGGTCACCGCCGCCCACTGCGGTGTCAC
Seq C2 exon
AACCTCTGATGTGGTAGTGGCTGGGGAGTTTGACCAAGGCTCAAGCTCTGAGAAGATCCAGAAGCTGAAGATCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011995-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(32.7=51.4)
A:
PF0008921=Trypsin=FE(11.7=100)
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCAACCTGTGCTAAGCG
R:
TTGGCGATCTTCAGCTTCTGG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]