RnoEX6060708 @ rn6
Exon Skipping
Gene
ENSRNOG00000019068 | Ctrb1
Description
chymotrypsinogen B1 [Source:RGD Symbol;Acc:2444]
Coordinates
chr19:43908315-43908769:-
Coord C1 exon
chr19:43908666-43908769
Coord A exon
chr19:43908498-43908577
Coord C2 exon
chr19:43908315-43908393
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCGTCCTCCCCAGGAT
3' ss Score
11.89
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCTGTGGAGTCCCTACCATCCAACCCGTGCTGACTGGCCTGTCCAGGATCGTCAACGGAGAGGATGCTATTCCCGGCTCCTGGCCCTGGCAGGTGTCTCTGCAG
Seq A exon
GATAAAACTGGCTTCCATTTCTGCGGGGGCTCCCTCATCAGCGAGGACTGGGTGGTCACTGCTGCCCACTGCGGGGTCAA
Seq C2 exon
GACCTCCGACGTGGTGGTAGCTGGAGAGTTTGACCAGGGCTCCGACGAAGAGAACATCCAGGTCCTGAAGATCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019068-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(8.1=51.4)
A:
PF0008921=Trypsin=FE(11.7=100)
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCCCTACCATCCAACC
R:
TGCGATCTTCAGGACCTGGAT
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]