GgaEX1000001 @ galGal4
Exon Skipping
Description
chymotrypsinogen 2-like precursor [Source:RefSeq peptide;Acc:NP_001264565]
Coordinates
chr11:1960296-1960735:-
Coord C1 exon
chr11:1960632-1960735
Coord A exon
chr11:1960454-1960533
Coord C2 exon
chr11:1960296-1960374
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACAGCCGCTCTCGCCGGCAGCGC
3' ss Score
6.29
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCTGCGGTGTGCCCGCCATCACGCCCGTCATCCGTGGCTACAACCGCATCGTGAACGGGGAGCCGGCGGTGCCCGGGTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq A exon
CGCTACGGCAACTTCCACTTCTGCGGCGGGTCGCTGATCAGCGAGCAATGGGTGGTCACTGCTGCCCACTGCGGGGTCAG
Seq C2 exon
GACCACCGACACCGTGGTGCTGGGCGAGTACGACCAGGAGACGGCCTCCAGTGACGTGCAGAGGTTGGGCATCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000038-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(8.1=51.4)
A:
PF0008921=Trypsin=FE(11.7=100)
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCACGCCCGTCATC
R:
CCCAACCTCTGCACGTCAC
Band lengths:
159-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]