BtaEX6080869 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34984068-34984488:-
Coord C1 exon
chr18:34984421-34984488
Coord A exon
chr18:34984239-34984344
Coord C2 exon
chr18:34984068-34984162
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACCCCCCTTGGTGCCCCCAGGAG
3' ss Score
9.28
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
AAAAGTTGTATGGCTCCAGTGGCCCTGAGCTCCGCCGCTCCCTCTTCTCACTAAAGCAGATCTTCCAG
Seq A exon
GAGGACAAGGACCTGGTGCCTGAATTCGTGCACTCTGAGGGGCTGAGTTGCCTGACCCGCGTGGGCGCCGCTGCTGACCACAACTACCAGAGCTACATCCTCCGAG
Seq C2 exon
CCCTAGGCCAGCTGATGCTGTTTGTGGATGGGATGCTGGGGGTGGTGGCCCACACTGAGACTGTGCAGTGGCTGTACACGCTGTGTGCCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427-'5-10,'5-8,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGTATGGCTCCAGTGGC
R:
CTGGCACACAGCGTGTACAG
Band lengths:
157-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]