HsaEX0025766 @ hg38
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr16:67238034-67238447:-
Coord C1 exon
chr16:67238380-67238447
Coord A exon
chr16:67238202-67238270
Coord C2 exon
chr16:67238034-67238128
Length
69 bp
Sequences
Splice sites
3' ss Seq
GCCTGAATTTGTGCATTCAGAGG
3' ss Score
5.28
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
AAAAGCTGTATAGCTCCAGTGGTCCTGAGCTCCGCCGCTCCCTCTTCTCACTGAAGCAGATCTTCCAG
Seq A exon
AGGGGCTGAGCTGCCTGATCCGTGTGGGTGCTGCTGCCGACCACAACTACCAGAGCTACATCCTTAGAG
Seq C2 exon
CGCTCGGCCAGCTGATGCTCTTTGTGGATGGAATGCTGGGGGTGGTGGCCCACAGTGACACTATTCAGTGGCTGTACACATTGTGTGCCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'10-16,'10-15,11-16
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTATAGCTCCAGTGGTCC
R:
CAGGCTGGCACACAATGTGTA
Band lengths:
159-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development