BtaEX6080876 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34979522-34980283:-
Coord C1 exon
chr18:34980128-34980283
Coord A exon
chr18:34979727-34979909
Coord C2 exon
chr18:34979522-34979641
Length
183 bp
Sequences
Splice sites
3' ss Seq
GATGGTGGGTGCATTCTTAGAAG
3' ss Score
1.16
5' ss Seq
CGGGTACTT
5' ss Score
5.36
Exon sequences
Seq C1 exon
AAAGCTGGTGAGGGCCGCCGTACAATGACCACAGTGCTGGACCCCAAGCGCAGCAATGCCATCAACATCGGCCTAACCACACTGCCACCTGTGCACGTGATCAAGGCTGCCCTGCTCAACTTTGATGAGTTTGCTGTAAGCAAGGATGGCATCGAG
Seq A exon
AAGCTACTGACCATGATGCCCACGGAGGAGGAGCGGCAGAAGATCGAGGAGGCCCAGCTGGCCAATCCCGACGTACCCTTGGGCCCAGCCGAGAATTTCCTGATGACTCTCGCCTCCATCGGGGGCCTGGCTGCCCGCCTACAACTCTGGGCCTTCAAACTGGATTATGACAGCATGGAGCGG
Seq C2 exon
GAAATTGCAGAGCCACTGTTCGACCTGAAAGTGGGCATGGAACAACTGGTGCAAAATGCCACCTTCCGCTGCATCCTGGCCACCCTGCTGGCTGTGGGCAACTTCCTCAATGGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427-'25-35,'25-33,26-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.246 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(13.7=100)
A:
PF0218118=FH2=FE(16.1=100)
C2:
PF0218118=FH2=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGACCACAGTGCTGGAC
R:
ATTGAGGAAGTTGCCCACAGC
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]