DreEX6006118 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34333736-34335822:+
Coord C1 exon
chr7:34333736-34333891
Coord A exon
chr7:34334106-34334288
Coord C2 exon
chr7:34335703-34335822
Length
183 bp
Sequences
Splice sites
3' ss Seq
GCTTCCTTCTGTATCTGTAGAAA
3' ss Score
8.41
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAAGGTGCTGAGGTGAAGAAAGCAGCAATTTCAGTGCTTGATCCTAAGAGAAGCAATGCCATCAACATCGGCATGACTGTATTACCTGCTATACATGTGATCAAAAGTGCCATCCTCACCTTTGACGAGTTTGCCATCAGTAAAGAAGGCATCGAG
Seq A exon
AAAATCCTAACCATGACACCAACAGAGGAAGAGAAACAGAAGATTCAGGAGGCTCAGCTGGCCAATCCGGATGTACCGCTGGGCACTGCAGAGCAGTTCCTGCTCACACTCTCCTCTATCAGCGGCCTAACAGCCAGATTACAGCTCTGGGCCTTTAAACTCAACTATGAGACCCTTGAGAAG
Seq C2 exon
GAGATTGCAGAGCCTCTTTTTGACCTGAAGCAGGGCATGGAACAACTCGCCAAGAACAAAACCTTCAAACGTATCCTAGCAACACTACTGGCCATTGGCAACTTCCTAAACAGCTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.131 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(13.8=100)
A:
PF0218118=FH2=FE(16.3=100)
C2:
PF0218118=FH2=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGTGAAGAAAGCAGCA
R:
CCAATGGCCAGTAGTGTTGCT
Band lengths:
248-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]