BtaEX6081141 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015991 | E-CADHERIN
Description
Bos taurus cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002763]
Coordinates
chr18:36230232-36233574:+
Coord C1 exon
chr18:36230232-36230360
Coord A exon
chr18:36231529-36231711
Coord C2 exon
chr18:36233330-36233574
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCTTTGCTCCTCAGTAC
3' ss Score
7.8
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AGTTTTCCCACATACACCCTGATGGTCCAAGCAGCAGACCTTAACGGCGAAGGCTTGAGCACAACTGCAACGGCCGTGATCACAGTCTTGGACACCAATGATAATGCTCCCAGATTCAACCCAACCACG
Seq A exon
TACGTGGGGTCAGTGCCTGAGAACGAGGCTAATGTGGCCATCACCACACTCACAGTGACTGATGCCGACGACCCCAACACCCCGGCATGGGAGGCTGTTTACACAGTATTAAATGATAACGAGAAGCAATTTATCGTCGTCACAGACCCAGTCACCAATGAAGGCACTCTGAAAACAGCTAAG
Seq C2 exon
GGCTTGGATTTTGAGGCCAAGCAGCAGTACATCCTGTACGTGGCAGTGACAAATGTGGCCCCCTTTGAAGTCACTCTCCCCACTTCCACAGCCACCGTCACTGTGGATGTGATAGATGTGAATGAAGCCCCCATCTTTGTGCCTCCTCAAAAGAGAGTGGAAGTGCCCGAGGACTTTGGCGTGGGCCTGGAGATCACATCCTATACTGCCCGGGAGCCAGACACATTTATGGAACAGAAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015991-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.311 C2=0.012
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(29.0=67.4)
A:
PF0002812=Cadherin=PU(60.6=98.4)
C2:
PF0002812=Cadherin=PD(37.4=45.1),PF0002812=Cadherin=PU(32.6=37.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGGTCCAAGCAGCAGAC
R:
GCACAAAGATGGGGGCTTCAT
Band lengths:
253-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]