MmuEX6038204 @ mm10
Exon Skipping
Gene
ENSMUSG00000000303 | Cdh1
Description
cadherin 1 [Source:MGI Symbol;Acc:MGI:88354]
Coordinates
chr8:106658191-106661040:+
Coord C1 exon
chr8:106658191-106658319
Coord A exon
chr8:106659590-106659772
Coord C2 exon
chr8:106660796-106661040
Length
183 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCCTTTCCTCTTCAGTAT
3' ss Score
9.6
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AGTTACCCTACATACACTCTGGTGGTTCAGGCTGCTGACCTTCAAGGTGAAGGCTTGAGCACAACAGCCAAGGCTGTGATCACTGTCAAGGATATTAATGACAACGCTCCTGTCTTCAACCCAAGCACG
Seq A exon
TATCAGGGTCAAGTGCCTGAGAATGAGGTCAATGCCCGGATCGCCACACTCAAAGTGACCGATGATGATGCCCCCAACACTCCGGCGTGGAAAGCTGTGTACACCGTAGTCAACGATCCTGACCAGCAGTTCGTTGTTGTCACAGACCCCACGACCAATGATGGCATTTTGAAAACAGCCAAG
Seq C2 exon
GGCTTGGATTTTGAGGCCAAGCAGCAATACATCCTTCATGTGAGAGTGGAGAACGAGGAACCCTTTGAGGGGTCTCTTGTCCCTTCCACAGCCACTGTCACTGTGGACGTGGTAGACGTGAATGAAGCCCCCATCTTTATGCCTGCGGAGAGGAGAGTCGAAGTGCCCGAAGACTTTGGTGTGGGTCAGGAAATCACATCTTATACCGCTCGAGAGCCGGACACGTTCATGGATCAGAAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000303-'12-17,'12-12,22-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.443 C2=0.159
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(29.0=67.4)
A:
PF0002812=Cadherin=PU(60.6=98.4)
C2:
PF0002812=Cadherin=PD(37.4=45.1),PF0002812=Cadherin=PU(32.3=37.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACTCTGGTGGTTCAGGCT
R:
TGGGGGCTTCATTCACGTCTA
Band lengths:
250-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types