DreEX6044336 @ danRer10
Exon Skipping
Gene
ENSDARG00000018693 | cdh2
Description
cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
Coordinates
chr20:17900878-17903437:+
Coord C1 exon
chr20:17900878-17901015
Coord A exon
chr20:17901102-17901287
Coord C2 exon
chr20:17903184-17903437
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTGTCTGTCTCTAGTTC
3' ss Score
11.55
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
AAGGTGCCTCAGTACACCCTGATCATCCAGGCTACCGATATGGAAGGAAACCCCACGTATGGTCTGTCCAACACCGCCACTGCTGTCATACGCCTGCTGGATGTCAATGACAACGCTCCCGAGTTCACCCGAGAGACT
Seq A exon
TTCCATGGTGAGGTCCCAGAGAACCGTGTGAATGTGATAGTGACCAATCTCACCGTGACCGACAAAGATGAACCGGGGACTCCAGCCTGGAATGCTGTGTACCGGATCATATCCGGGGACCCGACCGGACGCTTCTCCATTCCTACTGACCCTGTCACAAATGAAGGCCTTGTCACCGTTGTTAAG
Seq C2 exon
CCAGTTGATTTCGAGATGAATCGATCATTCATGCTGACTGTTGTCGCTGACAATGAAGTGCCACTAGCGAGTGGAATCCATCGCACACGCCAGTCTACAGCCACCGTATCCATCCGCGTCATCGATGTGAACGAAAGCCCCAACTTTGACCCCAACCCCAAACAGATCAAACTGGAGGAGGGTCTTCCGCAGTGGTCAATGCTAACGACTTTCACAGCTCATGATCCAGACAGATATATGCAGCAGACTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018693-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.339 C2=0.235
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(31.4=69.6)
A:
PF0002812=Cadherin=PU(59.2=98.4)
C2:
PF0002812=Cadherin=PD(38.8=47.1),PF0002812=Cadherin=PU(32.6=36.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCTGGATGTCAATGACA
R:
GTTAGCATTGACCACTGCGGA
Band lengths:
253-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]