BtaEX6091759 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021190 | CDH2
Description
Bos taurus cadherin 2, type 1, N-cadherin (neuronal) (CDH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166492]
Coordinates
chr24:29194549-29198344:+
Coord C1 exon
chr24:29194549-29194686
Coord A exon
chr24:29195383-29195568
Coord C2 exon
chr24:29198091-29198344
Length
186 bp
Sequences
Splice sites
3' ss Seq
GGCTTTGTCTTTTCTTGCAGTTC
3' ss Score
10.22
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAAGTACAACAGTATACGTTAATAATTCAAGCTACAGACATGGAAGGCAATCCCACATATGGCCTTTCCAACACAGCCACGGCTGTCATCACGGTGACAGATGTCAACGACAATCCTCCGGAGTTTACTGCCATGACG
Seq A exon
TTCTATGGTGAAGTCCCTGAAAACAGGGTAGATGTCATCGTCGCTAATCTAACAGTGACAGATAAGGATCAGCCCCACACACCGGCCTGGAACGCCATCTACAGAATCAGCGGTGGAGACCCCGCCGGCCGCTTTGCCATTCAAACTGACCCCAACAGCAACGACGGTTTAGTCACCGTAGTAAAA
Seq C2 exon
CCAATCGACTTTGAAACAAATAGGATGTATGTCCTTACTGTCGCTGCAGAAAATCAAGTGCCATTAGCCAAGGGTATTCAGCATCCACCTCAGTCAACTGCGACTGTGTCTGTCACAGTTATCGATGTGAATGAAAATCCTTATTTTGCCCCAAATCCAAAGATCATTCGCCAAGAAGAAGGCCTTCACGCCGGTACCGTGTTAACAACGTTTACTGCTCAGGACCCAGATCGATATATGCAGCAAAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021190-'15-11,'15-10,16-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.306 C2=0.271
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(31.4=69.6)
A:
PF0002812=Cadherin=PU(59.2=98.4)
C2:
PF0002812=Cadherin=PD(38.8=47.1),PF0002812=Cadherin=PU(32.6=36.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCGGAGTTTACTGCCAT
R:
CGATCTGGGTCCTGAGCAGTA
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]