MmuEX6000402 @ mm10
Exon Skipping
Gene
ENSMUSG00000024304 | Cdh2
Description
cadherin 2 [Source:MGI Symbol;Acc:MGI:88355]
Coordinates
chr18:16629459-16633145:-
Coord C1 exon
chr18:16633008-16633145
Coord A exon
chr18:16632204-16632389
Coord C2 exon
chr18:16629459-16629712
Length
186 bp
Sequences
Splice sites
3' ss Seq
GAGGCTTGTCTTTCTCGCAGTTC
3' ss Score
6.55
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAAGTGCAACAGTATACGTTAATAATTCAAGCCACAGACATGGAAGGCAATCCCACTTATGGCCTTTCAAACACAGCCACAGCCGTCATCACGGTGACAGATGTCAATGACAATCCTCCAGAGTTTACTGCCATGACT
Seq A exon
TTCTACGGAGAAGTCCCTGAGAACAGGGTGGACGTCATTGTAGCCAACCTAACTGTCACGGACAAAGATCAGCCCCACACGCCGGCCTGGAATGCGGCATACAGAATCAGTGGTGGAGACCCTACAGGAAGGTTTGCCATCCTGACAGACCCCAACAGCAATGATGGGCTAGTCACAGTGGTAAAA
Seq C2 exon
CCAATTGACTTTGAAACGAATAGGATGTTTGTCCTTACTGTTGCTGCAGAAAACCAAGTGCCATTAGCTAAAGGCATTCAGCACCCACCTCAGTCGACAGCCACTGTGTCTGTGACAGTTATTGATGTCAATGAAAATCCTTATTTTGCCCCAAATCCTAAAATCATTCGCCAAGAGGAAGGCCTCCACGCAGGTACCATGCTGACCACGCTCACTGCTCAGGACCCCGATCGATATATGCAACAGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024304-'30-17,'30-16,31-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.323 C2=0.365
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(31.4=69.6)
A:
PF0002812=Cadherin=PU(59.2=98.4)
C2:
PF0002812=Cadherin=PD(38.8=47.1),PF0002812=Cadherin=PU(32.6=36.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCAAACACAGCCACAGCC
R:
GCCTTCCTCTTGGCGAATGAT
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types