GgaEX1014182 @ galGal3
Exon Skipping
Gene
ENSGALG00000015132 | CADH2_CHICK
Description
NA
Coordinates
chr2:107973144-107976328:-
Coord C1 exon
chr2:107976191-107976328
Coord A exon
chr2:107975632-107975817
Coord C2 exon
chr2:107973144-107973400
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGTTCTTCTTTGCAGTTC
3' ss Score
10.85
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAAGTACAACAGTATACATTAATAATTCAAGCTACGGACATGGAAGGAAACCCAACATATGGTCTTTCAAACACAGCAACTGCTGTCATCACTGTGACAGATGTCAATGACAATCCTCCAGAGTTCACTGCTATGACT
Seq A exon
TTCTACGGTGAAGTACCAGAAAACAGAGTGGATGTCATAGTAGCTAACCTAACAGTAACAGATAAAGATCAGCCACACACGCCTGCGTGGAATGCGAGGTACCAAATGACAGGGGGAGACCCGACAGGCCAGTTTACTATCCTGACCGATCCAAATAGCAATGATGGGTTGGTAACTGTTGTCAAG
Seq C2 exon
CCCATTGACTTTGAGACCAACAGGATGTTTGTACTTACTGTAGCTGCAGAAAATCAAGTGCCTTTGGCTAAGGGGATTCAGCATCCTCCTCAGTCAACAGCAACCGTGTCCATTACAGTCATTGATGTGAATGAGAGTCCATATTTTGTTCCAAACCCCAAGCTTGTACGTCAAGAAGAAGGGCTACTTGCTGGTAGCATGTTGACAACTTTCACTGCTCGGGACCCAGATCGTTACATGCAGCAAACCTCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015132-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.516 C2=0.198
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(31.4=69.6)
A:
PF0002812=Cadherin=PU(59.2=98.4)
C2:
PF0002812=Cadherin=PD(38.8=46.5),PF0002812=Cadherin=PU(33.3=37.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCCTCCAGAGTTCACTGC
R:
GTCCCGAGCAGTGAAAGTTGT
Band lengths:
254-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]