RnoEX6058126 @ rn6
Exon Skipping
Gene
ENSRNOG00000015602 | Cdh2
Description
cadherin 2 [Source:RGD Symbol;Acc:69280]
Coordinates
chr18:8186868-8190394:-
Coord C1 exon
chr18:8190257-8190394
Coord A exon
chr18:8189366-8189551
Coord C2 exon
chr18:8186868-8187121
Length
186 bp
Sequences
Splice sites
3' ss Seq
GAGGTTCCTCTTTCCTGCAGTTC
3' ss Score
8.55
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAAGTGCAACAGTATACGTTAATAATTCAAGCCACTGACATGGAAGGCAATCCCACTTATGGCCTTTCAAACACAGCCACAGCCGTCATCACAGTGACAGATGTCAATGACAATCCTCCAGAGTTTACTGCCATGACC
Seq A exon
TTCTACGGAGAAGTCCCTGAGAACAGAGTGGATGTCATTGTAGCCAACCTGACTGTCACCGACAAGGACCAGCCCCACACACCAGCCTGGAATGCGGCATACAGAATCAGTGGTGGAGACCCCACGGGAAGGTTTGCCATCCTGACAGACCCCAACAGCAATGATGGGCTAGTCACAGTGGTAAAA
Seq C2 exon
CCAATTGACTTTGAAACGAATAGGATGTTTGTCCTCACTGTTGCTGCAGAAAACCAAGTGCCATTAGCTAAGGGGATCCAGCACCCACCTCAGTCGACAGCCACGGTGTCTGTGACAGTTATTGATGTCAATGAAAATCCTTATTTTGCCCCAAATCCTAAAATCATTCGCCAAGAGGAAGGCCTCCACGCAGGTACCATGCTGACCACTCTCACTGCTCAGGACCCCGATCGATATATGCAACAGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015602-'22-14,'22-13,23-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.323 C2=0.365
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(31.4=69.6)
A:
PF0002812=Cadherin=PU(59.2=98.4)
C2:
PF0002812=Cadherin=PD(38.8=47.1),PF0002812=Cadherin=PU(32.6=36.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGTCATCACAGTGACAG
R:
GCCTTCCTCTTGGCGAATGAT
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]