BtaEX6081940 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009521 | ZNF565
Description
Bos taurus zinc finger protein 565 (ZNF565), mRNA. [Source:RefSeq mRNA;Acc:NM_001102216]
Coordinates
chr18:47026566-47036368:-
Coord C1 exon
chr18:47036277-47036368
Coord A exon
chr18:47031188-47031261
Coord C2 exon
chr18:47026566-47026692
Length
74 bp
Sequences
Splice sites
3' ss Seq
CCCCTACTCTGTTTTTTCAGGAC
3' ss Score
11.42
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AAGTTGCTTCTGGATATTAGGTGTGAATTCTTTTTAGAACAAGGAAGACATCCTGGGCTGAGGAGAGAGACTGACAAAAGGCCTGTGCATAG
Seq A exon
GACTTTTCACTTGTTCAACAGAAGAATCTAAAGAAATCCAAGCAGGACAGGTGGTTCTAAAAGCCATGATCCAG
Seq C2 exon
GGATTGGTGACATTTAGGGATGTGGCTATAGAGTTCTCTCAGGAAGAATGGAAGTACCTGGAACCTGCCCAGAGGGACCTGTACAGGGAGGTGACTTTGGAAAACTTTGGCAACTTGGTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009521-'2-6,'2-5,5-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACATCCTGGGCTGAGGA
R:
AGTGAGACCAAGTTGCCAAAGT
Band lengths:
174-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]