HsaEX0073947 @ hg19
Exon Skipping
Gene
ENSG00000196357 | ZNF565
Description
zinc finger protein 565 [Source:HGNC Symbol;Acc:26726]
Coordinates
chr19:36685932-36705566:-
Coord C1 exon
chr19:36705524-36705566
Coord A exon
chr19:36692879-36692952
Coord C2 exon
chr19:36685932-36686058
Length
74 bp
Sequences
Splice sites
3' ss Seq
CCCCCATTTTGCTTTTTCAGGAC
3' ss Score
12.45
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTTAGCTCCGCAAGGACCCGGACGCGACCAGGGGAGGCAGAAG
Seq A exon
GACTCTGCACTTGTCCAAGAGAAGAATCCAGAGAAATCAGAGCAGGTCAAATAGTTCTAAAAGCCATGGCCCAG
Seq C2 exon
GGACTGGTGACATTCAGGGACGTGGCCATAGAGTTCTCTCTGGAAGAATGGAAGTGCCTGGAACCTGCTCAGAGGGACTTGTACAGGGAGGTGACTCTGGAGAACTTTGGTCACTTGGCCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196357-'1-3,'1-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCAGGGGAGGCAGAA
R:
GTGAGGCCAAGTGACCAAAGT
Band lengths:
143-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)